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PDBsum entry 4dwc
Go to PDB code:
Ligand/metal interactions
PDB id
4dwc
Ligand highlighted
NAG-NAG-FCA
Ligands
NAG-NAG-BMA-BMA-
MAN-MAN-BMA
×2
NAG 1(C) to BMA 7(C)
NAG-NAG
×4
NAG 1(D) to NAG 2(D)
NAG 1(E) to NAG 2(E)
NAG 1(I) to NAG 2(I)
NAG-NAG-FCA
NAG 1(G) to FCA 3(G)
NAG
×4
NAG 1112(A)
NAG 1113(A)
NAG 1108(B)
SO4
×7
SO4 1116(A)
SO4 1117(A)
SO4 1118(A)
Metals
_ZN
×2
ZN 1114(A)
ZN 1115(A)
Ligand
NAG-NAG-FCA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FCA
-
Alpha-D-Fucopyranose [Alpha-D-Fucose; 6-Deoxy-Alpha-D-Galactopyranose; d- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(G)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(G)
15
15
1
0
Complete
Chiral checks - OK
FCA 3(G)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-FCA
List of
interactions
NAG 1(G) to FCA 3(G)
_ZN
×2
