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PDBsum entry 2hpy
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Ligand/metal interactions
PDB id
2hpy
Ligand highlighted
NAG-NAG-BMA-BMA
Ligands
NAG-NAG-MAN
NAG 1(C) to MAN 3(C)
NAG-NAG
×2
NAG 1(D) to NAG 2(D)
NAG-NAG-BMA-BMA
NAG 1(E) to BMA 4(E)
RET
×2
RET 1296(A)
PLM
×6
PLM 1322(A)
PLM 1323(A)
PLM 1410(A)
HTG
×4
HTG 1507(A)
HTG 1508(A)
HTG 1509(B)
HTO
HTO 1401(B)
Metals
_HG
×6
HG 901(A)
HG 903(A)
HG 905(A)
_ZN
×7
ZN 957(A)
ZN 959(A)
ZN 962(A)
ZN 2011(A)
Ligand
NAG-NAG-BMA-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(E)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(E)
12
12
1
0
Complete
Chiral checks - OK
BMA 4(E)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-BMA
List of
interactions
NAG 1(E) to BMA 4(E)
_HG
×6
_ZN
×7
