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PDBsum entry 2e39
Go to PDB code:
Ligand/metal interactions
PDB id
2e39
Ligand highlighted
CYN-HEM
Ligands
NAG-NAG
NAG 1(B) to NAG 2(B)
MAN
MAN 404(A)
CYN-HEM
CYN 503(A) to HEM 401(A)
Metals
_CA
×2
CA 501(A)
CA 502(A)
Ligand
CYN-HEM
CYN
-
Cyanide ion
Formula:
CN
HEM
-
Protoporphyrin IX containing fe [Heme]
Formula:
C
34
H
32
FeN
4
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 401(A)
43
43
0
0
Complete
Chiral checks - OK
CYN 503(A)
2
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
HEM 401(A)
O2A: O1A
|
O1A: O2A
2
CYN 503(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Het Group HEM matches this enzyme's cofactor Heme b with similarity 95.45%
LIGPLOT
of interactions involving ligand CYN-HEM
List of
interactions
CYN 503(A) to HEM 401(A)
_CA
×2
