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PDBsum entry 2cdb
Go to PDB code:
Ligand/metal interactions
PDB id
2cdb
4 instances of ligand highlighted
NAP
Ligands
EDO
×4
EDO 1367(A)
BGC
×4
BGC 1368(A)
NAP
×4
NAP 1369(A)
Metals
_ZN
×8
ZN 1371(A)
ZN 1370(A)
Ligand
NAP
-
Nadp nicotinamide-Adenine-Dinucleotide phosphate
[2'-Monophosphoadenosine 5'-Diphosphoribose]
Formula:
C
21
H
28
N
7
O
17
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAP 1369(A)
48
48
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
NAP 1369(A)
O2A: O1A
|
O1A: O2A
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant NAD(+) with similarity 91.67%
LIGPLOT
of interactions involving ligand NAP
List of
interactions
NAP 1369(A)
also representing 3 other equivalent ligands:
NAP 1369(B)
NAP 1369(C)
NAP 1369(D)
_ZN
×8
