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PDBsum entry 2b8h
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Ligand/metal interactions PDB id
2b8h
Ligand highlighted
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
Ligands
NAG-NAG ×4
NAG 1(E) to NAG 2(E)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN ×3
NAG 1(F) to MAN 9(F)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
NAG 1(H) to MAN 10(H)
NAG ×4
NAG 500(A)
SO4 ×29
SO4 1513(A)
SO4 1514(A)
SO4 1515(A)
SO4 1517(A)
SO4 1518(A)
SO4 1519(A)
SO4 1520(A)
SO4 2516(A)
SO4 3516(B)
SO4 3521(C)
SO4 4516(C)
GOL ×3
GOL 5001(A)
GOL 5002(A)
GOL 5003(A)
Metals
_CL ×4
CL 4522(D)
CL 2522(B)
CL 3522(C)
  
Ligand NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN

NAG - 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine] Formula: C8H15NO6
BMA - Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose] Formula: C6H12O6
MAN - Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose] Formula: C6H12O6
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
NAG 1(H) 15 15 1 1 Complete Chiral checks - OK
NAG 2(H) 15 15 1 0 Complete Chiral checks - OK
BMA 3(H) 12 12 1 0 Complete Chiral checks - OK
MAN 4(H) 12 12 1 0 Complete Chiral checks - OK
MAN 5(H) 12 12 1 0 Complete Chiral checks - OK
MAN 6(H) 12 12 1 0 Complete Chiral checks - OK
MAN 7(H) 12 12 1 0 Complete Chiral checks - OK
MAN 8(H) 12 12 1 0 Complete Chiral checks - OK
MAN 9(H) 12 12 1 0 Complete Chiral checks - OK
MAN 10(H) 12 12 1 0 Complete Chiral checks - OK
Additional Information
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LIGPLOT of interactions involving ligand NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN

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List of
interactions
 

NAG 1(H) to MAN 10(H)
  
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