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PDBsum entry 2agd
Go to PDB code:
Ligand/metal interactions
PDB id
2agd
3 instances of ligand highlighted
UDH
Ligands
BMA-MAN-NAG
×3
BMA 1(D) to NAG 3(D)
SO4
×16
SO4 422(A)
SO4 423(A)
SO4 424(A)
SO4 433(A)
SO4 434(B)
SO4 437(B)
UDH
×3
UDH 399(A)
GOL
×8
GOL 417(A)
GOL 420(A)
GOL 421(A)
GOL 415(B)
GOL 416(B)
GOL 419(B)
DIO
DIO 438(C)
MES
MES 439(C)
Metals
_MN
×3
MN 400(A)
Ligand
UDH
-
6-Aminohexyl-Uridine-C1,5'-Diphosphate
Formula:
C
15
H
27
N
3
O
12
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
UDH 399(A)
32
32
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product UDP with similarity 78.12%
LIGPLOT
of interactions involving ligand UDH
List of
interactions
UDH 399(A)
also representing 2 other equivalent ligands:
UDH 401(B)
UDH 403(C)
_MN
×3
