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PDBsum entry 2a5h
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Ligand/metal interactions
PDB id
2a5h
4 instances of ligand highlighted
LYS-PLP
Ligands
SO4
×4
SO4 592(A)
SAM
×4
SAM 417(A)
LYS-PLP
×4
LYS 420(A) to PLP 419(A)
SF4
×4
SF4 418(A)
Metals
_ZN
×4
ZN 421(A)
ZN 421(C)
Ligand
LYS-PLP
-
Pyridoxal-5'-Phosphate
[Vitamin b6 phosphate]
Formula:
C
8
H
10
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PLP 419(A)
16
16
1
1
Complete
Chiral checks - OK
LYS 420(A)
10
10
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
PLP 419(A)
O2P: O1P
|
O1P: O2P
2
LYS 420(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand corresponds to this enzyme's reactant L-lysine
LIGPLOT
of interactions involving ligand LYS-PLP
List of
interactions
LYS 420(A) to PLP 419(A)
also representing 3 other equivalent ligands:
LYS 420(B) to PLP 419(B)
LYS 420(C) to PLP 419(C)
LYS 420(D) to PLP 419(D)
_ZN
×4
