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PDBsum entry 1hm2
Go to PDB code:
Ligand/metal interactions
PDB id
1hm2
Ligand highlighted
ASG-IDR-ASG-IDR
Ligands
MAN-GCU-XYP-MXY-
RAM
MAN 1(B) to RAM 5(B)
MAN-GCU-RAM
MAN 1(C) to RAM 3(C)
ASG-IDR-ASG-IDR
ASG 1(D) to IDR 4(D)
Metals
_CA
CA 1801(A)
Ligand
ASG-IDR-ASG-IDR
ASG
-
2-Acetamido-2-Deoxy-4-O-Sulfo-Beta-D-Galactopyranose [2-Deoxy-2-Acetamido-Beta-D-Galactose-4-Sulfate; n- Acetyl-4-O-Sulfo-Beta-D-Galactosamine; 2-Acetamido-2- Deoxy-4-O-Sulfo-Beta-D-Galactose; 2-Acetamido-2-Deoxy- 4-O-Sulfo-D-Galactose; 2-Acetamido-2-Deoxy-4-O-Sulfo- Galactose]
Formula:
C
8
H
15
NO
9
S
IDR
-
Alpha-L-Idopyranuronic acid [Alpha-L-Iduronic acid; l-Iduronic acid; iduronic acid]
Formula:
C
6
H
10
O
7
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ASG 1(D)
19
19
0
0
Complete
Chiral checks - OK
IDR 2(D)
13
13
1
0
Complete
Chiral checks - OK
ASG 3(D)
19
19
1
0
Complete
Chiral checks - OK
IDR 4(D)
13
13
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ASG 1(D)
OSB: OSA
|
OSA: OSB
2
IDR 2(D)
-
0
ASG 3(D)
OSB: OSA
|
OSA: OSB
2
IDR 4(D)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ASG-IDR-ASG-IDR
List of
interactions
ASG 1(D) to IDR 4(D)
_CA
