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PDBsum entry 3d4l
Go to PDB code:
Ligand/metal interactions
PDB id
3d4l
7 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NDG
×2
NAG 1(C) to NDG 2(C)
NAG 1(F) to NDG 2(F)
NAG-NAG
×7
NAG 1(D) to NAG 2(D)
NAG 1(E) to NAG 2(E)
NAG 1(G) to NAG 2(G)
NAG 1(H) to NAG 2(H)
NAG 1(J) to NAG 2(J)
NAG 1(K) to NAG 2(K)
NAG
×6
NAG 1092(A)
NAG 1281(A)
NAG 1520(A)
NAG 2150(B)
NAG 2321(B)
605
×2
605 1521(A)
Metals
_NA
NA 1(A)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(J)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(J)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(J) to NAG 2(J)
_NA
