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PDBsum entry 3vth
Go to PDB code:
Ligand/metal interactions
PDB id
3vth
2 instances of ligand highlighted
APC
Ligands
PO4
×7
PO4 803(A)
PO4 808(A)
PO4 809(A)
PO4 810(A)
PO4 811(A)
PO4 803(B)
PO4 808(B)
APC
×2
APC 804(A)
APC 804(B)
AP2
×2
AP2 806(A)
AP2 806(B)
GOL
×3
GOL 812(A)
GOL 813(A)
GOL 801(B)
Metals
_ZN
×3
ZN 801(A)
ZN 802(A)
ZN 802(B)
_MG
×2
MG 805(A)
MG 805(B)
_FE
×2
FE 807(A)
FE 807(B)
Ligand
APC
-
Diphosphomethylphosphonic acid adenosyl ester
[Alpha,Beta-Methyleneadenosine-5'-Triphosphate]
Formula:
C
11
H
18
N
5
O
12
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
APC 804(B)
31
31
0
0
0
0
0
1
0
0
Advanced Analysis
Residue
Name Mismatches
Count
APC 804(B)
O2G: O1G
|
O1G: O2G
|
O2B: O1B
|
O1B: O2B
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand APC
List of
interactions
APC 804(B)
_ZN
×3
_MG
×2
_FE
×2
