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PDBsum entry 7daf
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Ligand/metal interactions
PDB id
7daf
2 instances of ligand highlighted
GDP
Ligands
GTP
×2
GTP 501(A)
GDP
×2
GDP 501(B)
MES
×2
MES 504(B)
MES 505(B)
GZX
GZX 503(D)
ACP
ACP 402(F)
Metals
_CL
CL 504(A)
_MG
×6
MG 506(B)
MG 502(A)
MG 502(B)
MG 401(F)
_CA
×4
CA 503(C)
CA 201(E)
CA 503(B)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 501(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 501(B)
O3B: O1B
|
O1B: O3B
|
O2A: O1A
|
O1A: O2A
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 501(B)
(also representing equivalent ligand GDP 501(D) )
_CL
_CA
×4
