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PDBsum entry 7bgc
Go to PDB code:
Ligand/metal interactions
PDB id
7bgc
Ligand highlighted
GAL-SIA
Ligands
NAG-NAG-MAN-MAN-
FUC
NAG 1(B) to FUC 5(B)
GAL-SIA
GAL 1(C) to SIA 2(C)
NAG-NAG-FUC
×2
NAG 1(D) to FUC 3(D)
NAG 1(E) to FUC 3(E)
TKN
TKN 601(A)
NAG
×3
NAG 602(A)
NAG 603(A)
NAG 604(A)
MES
MES 605(A)
GOL
GOL 606(A)
SO4
×3
SO4 610(A)
SO4 611(A)
SO4 612(A)
Metals
_CL
×3
CL 607(A)
CL 608(A)
CL 609(A)
Ligand
GAL-SIA
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
19
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GAL 1(C)
12
12
0
0
Complete
Chiral checks - OK
SIA 2(C)
21
21
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GAL 1(C)
-
0
SIA 2(C)
O1B: O1A
|
O1A: O1B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GAL-SIA
List of
interactions
GAL 1(C) to SIA 2(C)
_CL
×3
