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PDBsum entry 6o2r
Go to PDB code:
Ligand/metal interactions
PDB id
6o2r
6 instances of ligand highlighted
GDP
Ligands
GTP
×6
GTP 501(A)
GDP
×6
GDP 501(B)
Metals
_MG
×6
MG 502(A)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 501(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 501(B)
O2A: O1A
|
O1A: O2A
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 501(B)
also representing 5 other equivalent ligands:
GDP 501(D)
GDP 501(F)
GDP 501(G)
GDP 501(H)
GDP 501(I)
_MG
×6
