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PDBsum entry 6ibm
Go to PDB code:
Ligand/metal interactions
PDB id
6ibm
2 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG-BMA
×3
NAG 1(C) to BMA 3(C)
NAG 1(E) to BMA 3(E)
NAG-NAG
×2
NAG 1(D) to NAG 2(D)
NAG-NAG-BMA-MAN-
MAN-MAN
NAG 1(F) to MAN 6(F)
PEG
×2
PEG 509(A)
PEG 510(A)
ACT
×4
ACT 511(A)
ACT 512(A)
ACT 513(A)
ACT 512(B)
SO4
×6
SO4 514(A)
SO4 515(A)
SO4 516(A)
SO4 515(B)
HF8
×2
HF8 517(A)
EDO
×18
EDO 518(A)
EDO 519(A)
EDO 520(A)
EDO 521(A)
EDO 522(A)
EDO 523(A)
EDO 524(A)
EDO 525(A)
EDO 526(A)
EDO 518(B)
EDO 519(B)
EDO 520(B)
EDO 521(B)
EDO 522(B)
EDO 524(B)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(D)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(D)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(D) to NAG 2(D)
(also representing equivalent ligand NAG 1(G) to NAG 2(G) )
