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PDBsum entry 4pxf
Go to PDB code:
Ligand/metal interactions
PDB id
4pxf
Ligand highlighted
NAG-NAG-BMA-MAN
Ligands
ASP-ILE-ASP-VAL-
MET-GLY-LEU
ASP 71(B) to LEU 77(B)
NAG-NAG-BMA-MAN
NAG 1(C) to MAN 4(C)
GLC-GLC
GLC 1(D) to GLC 2(D)
BOG
×3
BOG 405(A)
BOG 406(A)
BOG 407(A)
PLM
PLM 408(A)
SO4
SO4 409(A)
ACT
ACT 410(A)
Ligand
NAG-NAG-BMA-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(C)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(C)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN
List of
interactions
NAG 1(C) to MAN 4(C)
