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PDBsum entry 4elm
Go to PDB code:
Ligand/metal interactions
PDB id
4elm
Ligand highlighted
NAG-NAG-BMA-FUC
Ligands
NAG-NAG
NAG 1(I) to NAG 2(I)
NAG-NAG-BMA-FUC
NAG 1(J) to FUC 4(J)
NAG
×4
NAG 303(A)
NAG 304(A)
SGF
×2
SGF 305(A)
PLM
×2
PLM 306(A)
Ligand
NAG-NAG-BMA-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(J)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(J)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(J)
12
12
1
0
Complete
Chiral checks - OK
FUC 4(J)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-FUC
List of
interactions
NAG 1(J) to FUC 4(J)
