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PDBsum entry 4d4u
Go to PDB code:
Ligand/metal interactions
PDB id
4d4u
3 instances of ligand highlighted
NDG-GAL-FUC-FUC
Ligands
NAG-GAL-FUC
×4
NAG 1(C) to FUC 3(C)
NAG 1(D) to FUC 3(D)
NDG-GAL-FUC-FUC
×3
NDG 1(E) to FUC 4(E)
NDG 1(F) to FUC 4(F)
GAL-FUC
GAL 1(J) to FUC 2(J)
GOL
×2
GOL 940(A)
FUC
×2
FUC 950(A)
Ligand
NDG-GAL-FUC-FUC
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(E)
15
15
0
0
Complete
Chiral checks - OK
GAL 2(E)
12
12
1
0
Complete
Chiral checks - OK
FUC 3(E)
11
11
1
0
Complete
Chiral checks - OK
FUC 4(E)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-GAL-FUC-FUC
List of
interactions
NDG 1(E) to FUC 4(E)
(also representing equivalent ligand NDG 1(I) to FUC 4(I) )
