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PDBsum entry 4b9h
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Ligand/metal interactions
PDB id
4b9h
Ligand highlighted
NDG-NAG-NAG-NAG
Ligands
NAG-NAG
NAG 1(B) to NAG 2(B)
NDG-NAG-NAG-NAG
NDG 1(C) to NAG 4(C)
NAG
NAG 1198(A)
I3C
I3C 1203(A)
Ligand
NDG-NAG-NAG-NAG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(C)
15
15
0
0
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
NAG 3(C)
15
15
1
0
Complete
Chiral checks - OK
NAG 4(C)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-NAG-NAG-NAG
List of
interactions
NDG 1(C) to NAG 4(C)
