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PDBsum entry 3vbm
Go to PDB code:
Ligand/metal interactions
PDB id
3vbm
3 instances of ligand highlighted
TYD
Ligands
COA
×3
COA 189(A)
TYD
×3
TYD 301(A)
BCT
×3
BCT 453(A)
BCT 453(C)
Metals
_CL
CL 190(C)
Ligand
TYD
-
Thymidine-5'-Diphosphate
Formula:
C
10
H
16
N
2
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
TYD 301(A)
25
25
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
TYD 301(A)
O3B: O1B
|
O1B: O3B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand TYD
List of
interactions
TYD 301(A)
also representing 2 other equivalent ligands:
TYD 301(C)
TYD 301(E)
_CL
