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PDBsum entry 3upt
Go to PDB code:
Ligand/metal interactions
PDB id
3upt
2 instances of ligand highlighted
RP5
Ligands
TPP
×2
TPP 692(A)
RP5
×2
RP5 693(A)
Metals
_BR
×4
BR 696(A)
BR 694(B)
BR 695(A)
BR 693(B)
_CA
×2
CA 691(A)
Ligand
RP5
-
5-O-Phosphono-Beta-D-Ribofuranose
[[(2r,3s,4s,5r)-3,4,5-Trihydroxytetrahydrofuran-2-
Yl]methyl dihydrogen phosphate; 5-O-Phosphono-Beta-D-
Ribose; 5-O-Phosphono-D-Ribose; 5-O-Phosphono-Ribose]
Formula:
C
5
H
11
O
8
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
RP5 693(A)
14
14
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
RP5 693(A)
O2X: O1X
|
O1X: O2X
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand corresponds to this enzyme's product D-xylulose 5-phosphate
LIGPLOT
of interactions involving ligand RP5
List of
interactions
RP5 693(A)
(also representing equivalent ligand RP5 694(A) )
_BR
×4
_CA
×2
