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PDBsum entry 3ryk
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Ligand/metal interactions PDB id
3ryk
Ligand highlighted
TYD
Ligands
POP
POP 182(A)
TYD
TYD 182(B)
  
Ligand TYD - Thymidine-5'-Diphosphate
Formula: C10H16N2O11P2
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
TYD 182(B) 25 25 0 0 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
TYD 182(B) O2A: O1A|O1A: O2A|O2B: O1B|O1B: O2B 4
Additional Information
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Ligand matches this enzyme's reactant dTDP-4-dehydro-6-deoxy-alpha-D-glucose with similarity 71.43%


LIGPLOT of interactions involving ligand TYD

JSmol




List of
interactions
 

TYD 182(B)
  
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