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PDBsum entry 3d9p
Go to PDB code:
Ligand/metal interactions
PDB id
3d9p
Ligand highlighted
PRO-SER-TYR-SEP-
PRO-THR-SEP-PRO
Ligands
TYR-SEP-PRO
TYR 1(Y) to PRO 3(Y)
PRO-SER-TYR-SEP-
PRO-THR-SEP-PRO
PRO -1(Z) to PRO 6(Z)
SO4
×10
SO4 146(A)
SO4 147(A)
SO4 148(A)
SO4 149(A)
SO4 150(A)
SO4 151(A)
SO4 146(B)
SO4 149(B)
Ligand
PRO-SER-TYR-SEP-PRO-THR-SEP-PRO
-
Phosphoserine
[Phosphonoserine]
Formula:
C
3
H
8
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PRO -1(Z)
8
8
1
1
0
0
0
0
0
0
SER 0(Z)
7
7
1
1
0
0
0
0
0
0
TYR 1(Z)
13
13
1
1
0
0
0
0
0
0
SEP 2(Z)
11
11
1
1
0
0
0
0
0
0
PRO 3(Z)
8
8
1
1
0
0
0
0
0
0
THR 4(Z)
8
8
1
1
0
0
0
0
0
0
SEP 5(Z)
11
11
1
1
0
0
0
0
0
0
PRO 6(Z)
8
7
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
PRO -1(Z)
-
0
SER 0(Z)
-
0
TYR 1(Z)
-
0
SEP 2(Z)
O2P: O1P
|
O1P: O3P
2
PRO 3(Z)
-
0
THR 4(Z)
-
0
SEP 5(Z)
O: OXT
|
O2P: O1P
|
O1P: O3P
3
PRO 6(Z)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand PRO-SER-TYR-SEP-PRO-THR-SEP-PRO
List of
interactions
PRO -1(Z) to PRO 6(Z)
