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PDBsum entry 3bef
Go to PDB code:
Ligand/metal interactions
PDB id
3bef
Ligand highlighted
ASP-LYS-TYR-GLU-
PRO-PHE-TRP
Ligands
ASN-ASP-LYS-TYR-
GLU-PRO-PHE-TRP-
GLU
ASN 49(C) to GLU 57(C)
ASP-LYS-TYR-GLU-
PRO-PHE-TRP
ASP 50(F) to TRP 56(F)
NAG
×2
NAG 301(B)
Ligand
ASP-LYS-TYR-GLU-PRO-PHE-TRP
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ASP 50(F)
9
9
1
1
0
0
0
0
0
0
LYS 51(F)
10
10
1
1
0
0
0
0
0
0
TYR 52(F)
13
13
1
1
0
0
0
0
0
0
GLU 53(F)
10
10
1
1
0
0
0
0
0
0
PRO 54(F)
8
8
1
1
0
0
0
0
0
0
PHE 55(F)
12
12
1
1
0
0
0
0
0
0
TRP 56(F)
15
14
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ASP 50(F)
-
0
LYS 51(F)
-
0
TYR 52(F)
O: OXT
1
GLU 53(F)
-
0
PRO 54(F)
-
0
PHE 55(F)
O: OXT
1
TRP 56(F)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ASP-LYS-TYR-GLU-PRO-PHE-TRP
List of
interactions
ASP 50(F) to TRP 56(F)
