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PDBsum entry 2fk0
Go to PDB code:
Ligand/metal interactions
PDB id
2fk0
3 instances of ligand highlighted
NAG-NAG-BMA
Ligands
NAG-NAG
×13
NAG 1(S) to NAG 2(S)
NAG 1(V) to NAG 2(V)
NAG 1(b) to NAG 2(b)
NAG 1(d) to NAG 2(d)
NAG 1(f) to NAG 2(f)
NAG 1(h) to NAG 2(h)
NAG-NAG-BMA
×3
NAG 1(T) to BMA 3(T)
Ligand
NAG-NAG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(T)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(T)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(T)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA
List of
interactions
NAG 1(T) to BMA 3(T)
also representing 2 other equivalent ligands:
NAG 1(X) to BMA 3(X)
NAG 1(Z) to BMA 3(Z)
