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PDBsum entry 2fa7
Go to PDB code:
Ligand/metal interactions
PDB id
2fa7
Ligand highlighted
NAG-NDG-MAN-BMA-
BMA
Ligands
NAG-NAG
NAG 1(B) to NAG 2(B)
NAG-NDG-MAN-BMA-
BMA
NAG 1(C) to BMA 5(C)
NAG-NAG-MAN-BMA-
BMA-MAN
NAG 1(D) to MAN 6(D)
NAG-NAG-NAG-NAG-
NDG
NAG 1(E) to NDG 5(E)
SO4
SO4 301(A)
CO3
CO3 693(A)
Metals
_ZN
×3
ZN 302(A)
ZN 303(A)
ZN 304(A)
_FE
FE 692(A)
Ligand
NAG-NDG-MAN-BMA-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NDG 2(C)
15
15
1
0
Complete
Chiral checks - OK
MAN 3(C)
12
12
1
0
Complete
Chiral checks - OK
BMA 4(C)
12
12
1
0
Complete
Chiral checks - OK
BMA 5(C)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NDG-MAN-BMA-BMA
List of
interactions
NAG 1(C) to BMA 5(C)
_ZN
×3
_FE
