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PDBsum entry 2arx
Go to PDB code:
Ligand/metal interactions
PDB id
2arx
Ligand highlighted
NDG-BMA-MAN-NAG-
GAL-MAN-NAG
Ligands
MAN-MAN
MAN 1(C) to MAN 2(C)
NDG-BMA-MAN-NAG-
GAL-MAN-NAG
NDG 1(D) to NAG 7(D)
NAG
NAG 918(B)
Metals
_CA
×2
CA 253(A)
_MN
×2
MN 903(A)
Ligand
NDG-BMA-MAN-NAG-GAL-MAN-NAG
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NDG 1(D)
15
15
0
0
Complete
Chiral checks - OK
BMA 2(D)
12
12
1
0
Complete
Chiral checks - OK
MAN 3(D)
12
12
1
0
Complete
Chiral checks - OK
NAG 4(D)
15
15
1
0
Complete
Chiral checks - OK
GAL 5(D)
12
12
1
0
Complete
Chiral checks - OK
MAN 6(D)
12
12
1
0
Complete
Chiral checks - OK
NAG 7(D)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NDG-BMA-MAN-NAG-GAL-MAN-NAG
List of
interactions
NDG 1(D) to NAG 7(D)
_CA
×2
_MN
×2
