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PDBsum entry 1v8x
Go to PDB code:
Ligand/metal interactions
PDB id
1v8x
3 instances of ligand highlighted
HEM
Ligands
GLC-FRU
GLC 1(D) to FRU 2(D)
HEM
×3
HEM 901(A)
HEM 902(B)
HEM 903(C)
SO4
×12
SO4 2003(A)
SO4 2007(A)
SO4 2011(A)
SO4 2001(B)
SO4 2006(B)
SO4 2008(B)
SO4 2009(B)
SO4 2002(C)
SO4 2004(C)
SO4 2005(C)
SO4 2010(C)
SO4 2012(C)
OXY
×3
OXY 5001(A)
OXY 5002(B)
OXY 5003(C)
Ligand
HEM
-
Protoporphyrin IX containing fe
[Heme]
Formula:
C
34
H
32
FeN
4
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 901(A)
43
43
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
HEM 901(A)
O2A: O1A
|
O1A: O2A
|
O2D: O1D
|
O1D: O2D
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant heme b with similarity 95.45%
LIGPLOT
of interactions involving ligand HEM
List of
interactions
HEM 901(A)
