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PDBsum entry 1v0n
Go to PDB code:
Ligand/metal interactions
PDB id
1v0n
Ligand highlighted
XIF-XYP
Ligands
EDO
×2
EDO 1303(A)
EDO 1304(A)
XIF-XYP
XIF 1305(A) to XYP 1306(A)
IMD
IMD 1307(A)
Ligand
XIF-XYP
XIF
-
Piperidine-3,4-Diol [Xylose-Derived isofagomine]
Formula:
C
5
H
11
NO
2
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
XIF 1305(A)
8
8
0
0
Complete
Chiral checks - OK
XYP 1306(A)
10
10
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand XIF-XYP
List of
interactions
XIF 1305(A) to XYP 1306(A)
