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PDBsum entry 1ktw
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Ligand/metal interactions
PDB id
1ktw
Ligand highlighted
G4S-DGS-G4S-DGS
Ligands
G4S-DGS
G4S 1(C) to DGS 2(C)
G4S-DGS-G4S-DGS
G4S 1(D) to DGS 4(D)
Metals
_CL
×2
CL 530(A)
_CA
×10
CA 496(A)
CA 3(A)
CA 5(A)
CA 7(A)
CA 9(A)
_NA
×4
NA 11(A)
NA 13(A)
Ligand
G4S-DGS-G4S-DGS
G4S
-
4-O-Sulfo-Beta-D-Galactopyranose [4-O-Sulfo-Beta-D-Galactose; 4-O-Sulfo-D-Galactose; 4-O- Sulfo-Galactose]
Formula:
C
6
H
12
O
9
S
DGS
-
3,6-Anhydro-2-O-Sulfo-Alpha-D-Galactopyranose [3,6-Anhydro-D-Galactose-2-Sulfate; 3,6-Anhydro-2-O- Sulfo-Alpha-D-Galactose; 3,6-Anhydro-2-O-Sulfo-D- Galactose; 3,6-Anhydro-2-O-Sulfo-Galactose]
Formula:
C
6
H
10
O
8
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
G4S 1(D)
16
16
0
0
Complete
Chiral checks - OK
DGS 2(D)
15
15
1
0
Complete
Chiral checks - OK
G4S 3(D)
16
16
1
0
Complete
Chiral checks - OK
DGS 4(D)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand G4S-DGS-G4S-DGS
List of
interactions
G4S 1(D) to DGS 4(D)
_CL
×2
_CA
×10
