spacer
spacer

PDBsum entry 1kp8
Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) links
Ligand/metal interactions PDB id
1kp8
14 instances of ligand highlighted
AGS
Ligands
SO4 ×22
SO4 4001(A)
SO4 4007(A)
SO4 4008(A)
SO4 4004(F)
SO4 4002(G)
SO4 4003(L)
AGS ×14
AGS 1(A)
Metals
_MG ×14
MG 550(A)
__K ×16
K 549(A)
K 1(D)
K 549(E)
  
Ligand AGS - Phosphothiophosphoric acid-Adenylate ester
[Atp-Gamma-S; adenosine 5'-(3-
Thiotriphosphate); adenosine 5'-(Gamma-
Thiotriphosphate); adenosine-5'-
Diphosphate monothiophosphate]
Formula: C10H16N5O12P3S
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
AGS 1(A) 31 31 0 0 0 0 0 1 0 0
Advanced Analysis
Residue Name Mismatches Count
AGS 1(A) O2B: O1B|O1B: O2B 2
Additional Information
Use mouse to move/zoom
3D Viewers:
3Dmol.js
 
  JSmol
 

Ligand matches this enzyme's reactant ATP with similarity 93.75%


LIGPLOT of interactions involving ligand AGS

JSmol




List of
interactions
 

AGS 1(A)

also representing 13 other equivalent ligands:
AGS 1(B)
AGS 1(C)
AGS 551(D)
AGS 1(E)
AGS 1(F)
AGS 1(G)
AGS 1(H)
AGS 1(I)
AGS 1(J)
AGS 1(K)
AGS 1(L)
AGS 1(M)
AGS 1(N)
  
spacer
spacer