PDBsum entry 146d

Ligand/metal interactions

PDB id

146d


	2 instances of ligand highlighted
	DDA-DDL-MDA

Ligands

DDA-DDA ×2

DDA 1(C) to DDA 2(C)

DDA 1(E) to DDA 2(E)

DDA-DDL-MDA ×2

DDA 1(D) to MDA 3(D)

DDA 1(F) to MDA 3(F)

CRH ×2

CRH 9(A)

CRH 3(B)

Metals

_MG

MG 13(A)

Ligand DDA-DDL-MDA

DDA - Beta-D-Olivopyranose [Beta-D-Olivose; 2,6-Dideoxy-Beta-D-Arabino- Hexopyranose; 2,6-Dideoxy-Beta-D-Glucopyranose; 2,6- Dideoxy-Beta-D-Mannopyranose; 2-Deoxy-Beta-D- Quinovopyranose; 2-Deoxy-Beta-D-Rhamnoopyranose; d- Olivose; olivose; 2,6-Dideoxy-Beta-D-Glucose; 2,6- Dideoxy-Beta-D-Mannose] Formula: C₆H₁₂O₄

DDL - 2,6-Dideoxy-Beta-D-Galactopyranose [2,6-Dideoxy-Beta-D-Galactose; 2,6-Dideoxy-Beta-D- Talose; 2,6-Dideoxy-Beta-D-Lyxo-Hexopyranose; 2-Deoxy- Beta-D-Fucopyranose; 2,6-Dideoxy-D-Galactose; 2,6- Dideoxy-Galactose] Formula: C₆H₁₂O₄

MDA - 2,6-Dideoxy-3-C-Methyl-Beta-D-Ribo-Hexopyranose [2,6-Dideoxy-3 c-Methyl-D-Ribopyranoside; 2,6-Dideoxy-3- C-Methyl-Beta-D-Ribo-Hexose; 2,6-Dideoxy-3-C-Methyl-D- Ribo-Hexose; 2,6-Dideoxy-3-C-Methyl-Ribo-Hexose] Formula: C₇H₁₄O₄

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
DDA 1(D)	10	10	0	0	Complete		Chiral checks - OK
DDL 2(D)	10	10	1	0	Complete		Chiral checks - OK
MDA 3(D)	11	11	1	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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LIGPLOT of interactions involving ligand DDA-DDL-MDA

List of
interactions

DDA 1(D) to MDA 3(D)