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PDBsum entry 3kd7
Go to PDB code:
Ligand/metal interactions
PDB id
3kd7
5 instances of ligand highlighted
ACE-MET-GLU-GLU-
VAL-ASP
Ligands
ACE-MET-GLU-GLU-
VAL-ASP
×5
ACE 0(G) to ASP 5(G)
ACE 0(I) to ASP 5(I)
ACE 0(J) to ASP 5(J)
ACE 0(K) to ASP 5(K)
Ligand
ACE-MET-GLU-GLU-VAL-ASP
-
Acetyl group
Formula:
C
2
H
4
O
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ACE 0(I)
3
-
-
-
Residue too small to validate
MET 1(I)
9
9
1
1
Complete
Chiral checks - OK
GLU 2(I)
10
10
1
1
Complete
Chiral checks - OK
GLU 3(I)
10
10
1
1
Complete
Chiral checks - OK
VAL 4(I)
8
8
1
1
Complete
Chiral checks - OK
ASP 5(I)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ACE 0(I)
-
0
MET 1(I)
O: OXT
1
GLU 2(I)
-
0
GLU 3(I)
-
0
VAL 4(I)
-
0
ASP 5(I)
OXT: O
|
OD2: OD1
|
OD1: OD2
|
O: OXT
4
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ACE-MET-GLU-GLU-VAL-ASP
List of
interactions
ACE 0(I) to ASP 5(I)
