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PDBsum entry 3ca5
Go to PDB code:
Ligand/metal interactions
PDB id
3ca5
2 instances of ligand highlighted
NAG-FUC-NAG
Ligands
NAG-FUC-NAG
×2
NAG 1(B) to NAG 3(B)
NAG 1(C) to NAG 3(C)
NAG-NAG
NAG 1(D) to NAG 2(D)
NAG
NAG 266(A)
AMG
×2
AMG 267(A)
AMG 268(A)
SO4
×5
SO4 901(A)
SO4 902(A)
SO4 903(A)
SO4 904(A)
SO4 905(A)
ACT
ACT 910(A)
Ligand
NAG-FUC-NAG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
FUC 2(C)
11
11
1
0
Complete
Chiral checks - OK
NAG 3(C)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC-NAG
List of
interactions
NAG 1(C) to NAG 3(C)
