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PDBsum entry 2j4c
Go to PDB code:
Ligand/metal interactions
PDB id
2j4c
2 instances of ligand highlighted
NAG-NAG-FUC
Ligands
NAG-NAG-FUC
×2
NAG 1(B) to FUC 3(B)
NAG 1(C) to FUC 3(C)
NAG
×3
NAG 1536(A)
NAG 1537(A)
NAG 1538(A)
SO4
×2
SO4 1543(A)
SO4 1549(A)
GOL
×3
GOL 1544(A)
GOL 1545(A)
GOL 1546(A)
BUA
BUA 1547(A)
MES
MES 1548(A)
Metals
_HG
×4
HG 3003(A)
HG 1540(A)
HG 1541(A)
HG 1542(A)
_CL
×3
CL 1539(A)
CL 3001(A)
CL 3002(A)
Ligand
NAG-NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
FUC 3(C)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-FUC
List of
interactions
NAG 1(C) to FUC 3(C)
_HG
×4
