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PDBsum entry 1v6w
Go to PDB code:
Ligand/metal interactions
PDB id
1v6w
2 instances of ligand highlighted
XYP-XYP-GCV
Ligands
XYP-XYP-GCV
×2
XYP 1(C) to GCV 3(C)
XYP 1(D) to GCV 3(D)
XYP-XYP
XYP 1(E) to XYP 2(E)
XYP
×2
XYP 961(B)
XYP 971(B)
Ligand
XYP-XYP-GCV
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
GCV
-
4-O-Methyl-Alpha-D-Glucopyranuronic acid [4-O-Methyl-Alpha-D-Glucuronic acid; 4-O-Methyl-D- Glucuronic acid; 4-O-Methyl-Glucuronic acid]
Formula:
C
7
H
12
O
7
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
XYP 1(D)
10
10
0
0
Complete
Chiral checks - OK
XYP 2(D)
10
10
1
0
Complete
Chiral checks - OK
GCV 3(D)
14
14
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand XYP-XYP-GCV
List of
interactions
XYP 1(D) to GCV 3(D)
