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PDBsum entry 7knh
Go to PDB code:
Ligand/metal interactions
PDB id
7knh
4 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG
×4
NAG 1(F) to NAG 2(F)
NAG 1(G) to NAG 2(G)
NAG
×48
NAG 1301(C)
NAG 1302(C)
NAG 1303(C)
NAG 1304(C)
NAG 1305(C)
NAG 1306(C)
NAG 1307(C)
NAG 1308(C)
NAG 1309(C)
NAG 1310(C)
NAG 1311(C)
NAG 1312(C)
NAG 1313(C)
NAG 1309(A)
NAG 1311(A)
NAG 1313(A)
NAG 701(E)
NAG 702(E)
NAG 703(E)
NAG 1313(B)
NAG 701(D)
NAG 702(D)
NAG 703(D)
NAG 704(D)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(F)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product L-phenylalanine with similarity 44.44%
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(F) to NAG 2(F)
also representing 2 other equivalent ligands:
NAG 1(H) to NAG 2(H)
NAG 1(I) to NAG 2(I)
