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PDBsum entry 7kd7
Go to PDB code:
Ligand/metal interactions
PDB id
7kd7
2 instances of ligand highlighted
SER-GLY-ARG-GLY-
LYS
Ligands
SER-GLY-ARG-GLY-
LYS
×2
SER 1(E) to LYS 5(E)
GOL
×4
GOL 501(D)
GOL 502(D)
GOL 1301(A)
GOL 1303(A)
SO4
×4
SO4 503(D)
SO4 504(D)
SO4 505(D)
BTB
BTB 506(D)
CMC
×2
CMC 301(E)
NH2
×2
NH2 302(E)
Ligand
SER-GLY-ARG-GLY-LYS
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SER 1(E)
7
6
0
0
1
0
-
-
-
-
GLY 2(E)
5
-
-
-
-
-
-
-
-
-
ARG 3(E)
12
12
1
1
0
0
0
0
0
0
GLY 4(E)
5
-
-
-
-
-
-
-
-
-
LYS 5(E)
10
7
1
1
3
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
SER 1(E)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
GLY 2(E)
-
0
ARG 3(E)
O: OXT
1
GLY 4(E)
-
0
LYS 5(E)
-
0
Additional Information
Validation carried out using
MotiveValidator
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand SER-GLY-ARG-GLY-LYS
List of
interactions
SER 1(E) to LYS 5(E)
(also representing equivalent ligand SER 1(B) to LYS 5(B) )
