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PDBsum entry 6yb6
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Ligand/metal interactions
PDB id
6yb6
Ligand highlighted
DPN-PRO-OJK
Ligands
DPN-PRO-OJK
DPN 1(D) to OJK 3(D)
DMS
×2
DMS 303(H)
DMS 306(H)
NAG
NAG 304(H)
PO4
PO4 305(H)
Metals
_NA
×2
NA 301(H)
NA 302(H)
Ligand
DPN-PRO-OJK
DPN
-
D-Phenylalanine
Formula:
C
9
H
11
NO
2
OJK
-
2-(Aminomethyl)-5-Chloranyl-Benzene-1,4-Diol
Formula:
C
7
H
8
ClNO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
DPN 1(D)
12
12
1
1
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
DPN 1(D)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand DPN-PRO-OJK
List of
interactions
DPN 1(D) to OJK 3(D)
_NA
×2
