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PDBsum entry 6y0x
Go to PDB code:
Ligand/metal interactions
PDB id
6y0x
Ligand highlighted
DLY-DTY-DLY-DLY-
DAL
Ligands
DLY-DTY-DLY-DLY-
DAL
DLY 2(I) to DAL 6(I)
DLY-DTY-DLY-DLY-
DAL-DLE-DLY-DLY-
DLE-DAL-DLY-DLE-
NH2
×5
DLY 2(J) to NH2 15(J)
DLY 2(L) to NH2 15(L)
DLY 2(M) to NH2 15(M)
DLY 2(O) to NH2 15(O)
DLY 2(Q) to NH2 15(Q)
DLY-DTY-DLY-DLY-
DAL-DLE
DLY 2(K) to DLE 8(K)
DLY-DTY-DLY-DLY-
DAL-DLE-DLY-DLY-
DLE-DAL-DLY
DLY 2(R) to DLY 13(R)
ZDC-DLY
ZDC 101(A) to DLY 102(A)
ZDC
×11
ZDC 103(A)
ZDC 101(I)
ZDC 101(J)
ZDC 101(K)
ZDC 101(M)
ZDC 101(O)
ZDC 101(Q)
Ligand
DLY-DTY-DLY-DLY-DAL
DLY
-
D-Lysine
Formula:
C
6
H
14
N
2
O
2
DTY
-
D-Tyrosine
Formula:
C
9
H
11
NO
3
DAL
-
D-Alanine
Formula:
C
3
H
7
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
DLY 2(I)
10
10
1
1
Complete
Chiral checks - OK
DTY 3(I)
13
13
1
1
Complete
Chiral checks - OK
DLY 4(I)
10
10
1
1
Complete
Chiral checks - OK
DLY 5(I)
10
10
1
1
Complete
Chiral checks - OK
DAL 6(I)
6
-
-
-
Residue too small to validate
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand DLY-DTY-DLY-DLY-DAL
List of
interactions
DLY 2(I) to DAL 6(I)
