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PDBsum entry 6tmo
Go to PDB code:
Ligand/metal interactions
PDB id
6tmo
Ligand highlighted
GLU-ALA-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
Ligands
GLU-ALA-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
GLU 1(C) to VAL 10(C)
GOL
×5
GOL 301(A)
GOL 302(A)
GOL 303(A)
GOL 201(D)
GOL 301(E)
EDO
×7
EDO 304(A)
EDO 305(A)
EDO 306(A)
EDO 307(A)
EDO 101(B)
EDO 202(D)
EDO 302(E)
SO4
×5
SO4 308(A)
SO4 309(A)
SO4 102(B)
SO4 303(E)
SO4 304(E)
TAM
×3
TAM 310(A)
TAM 305(E)
TAM 306(E)
Ligand
GLU-ALA-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLU 1(C)
10
10
1
1
Complete
Chiral checks - OK
ALA 2(C)
6
-
-
-
Residue too small to validate
ALA 3(C)
6
-
-
-
Residue too small to validate
GLY 4(C)
5
-
-
-
Residue too small to validate
ILE 5(C)
9
9
1
1
Complete
Chiral checks - OK
GLY 6(C)
5
-
-
-
Residue too small to validate
ILE 7(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 8(C)
9
9
1
1
Complete
Chiral checks - OK
THR 9(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 10(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLU 1(C)
OE2: OE1
|
OE1: OE2
|
O: OXT
3
ALA 2(C)
-
0
ALA 3(C)
-
0
GLY 4(C)
-
0
ILE 5(C)
O: OXT
1
GLY 6(C)
-
0
ILE 7(C)
-
0
LEU 8(C)
O: OXT
1
THR 9(C)
-
0
VAL 10(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
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Validator
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LIGPLOT
of interactions involving ligand GLU-ALA-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
List of
interactions
GLU 1(C) to VAL 10(C)
