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PDBsum entry 6t25
Go to PDB code:
Ligand/metal interactions
PDB id
6t25
5 instances of ligand highlighted
TRP-EEP-ALA-DTH-
CYS-HYP-ALA
Ligands
TRP-EEP-ALA-DTH-
CYS-HYP-ALA
×5
TRP 1(F) to ALA 7(F)
TRP 1(G) to ALA 7(G)
TRP 1(H) to ALA 7(H)
TRP 1(I) to ALA 7(I)
ADP
×5
ADP 376(A)
Metals
_MG
×5
MG 377(A)
Ligand
TRP-EEP-ALA-DTH-CYS-HYP-ALA
EEP
-
(2s,4r)-2-Amino-4,5-Dihydroxy-4-Methylpentanoic acid
Formula:
C
6
H
13
NO
4
DTH
-
D-Threonine
Formula:
C
4
H
9
NO
3
HYP
-
4-Hydroxyproline [Hydroxyproline]
Formula:
C
5
H
9
NO
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
TRP 1(F)
15
15
1
1
Complete
Chiral checks - OK
EEP 2(F)
11
11
1
1
Complete
Chiral checks - OK
ALA 3(F)
6
-
-
-
Residue too small to validate
DTH 4(F)
8
8
1
1
Complete
Chiral checks - OK
CYS 5(F)
7
7
1
1
Complete
Chiral checks - OK
HYP 6(F)
9
9
1
1
Complete
Chiral checks - OK
ALA 7(F)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
TRP 1(F)
O: OXT
1
EEP 2(F)
O: OXT
1
ALA 3(F)
-
0
DTH 4(F)
-
0
CYS 5(F)
-
0
HYP 6(F)
O: OXT
1
ALA 7(F)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand TRP-EEP-ALA-DTH-CYS-HYP-ALA
List of
interactions
TRP 1(F) to ALA 7(F)
_MG
×5
