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PDBsum entry 6pt2
Go to PDB code:
Ligand/metal interactions
PDB id
6pt2
2 instances of ligand highlighted
DI7-DAR-PHE-SAR-
OXJ
Ligands
DI7-DAR-PHE-SAR-
OXJ
×2
DI7 1(C) to OXJ 5(C)
DI7 1(D) to OXJ 5(D)
CLR
CLR 1201(A)
OLA
×7
OLA 1202(A)
OLA 1203(A)
OLA 1201(B)
OLA 1202(B)
OLA 1203(B)
OLA 1204(B)
OLA 1205(B)
OLC
OLC 1206(B)
Ligand
DI7-DAR-PHE-SAR-OXJ
DI7
-
2,6-Dimethyl-L-Tyrosine
Formula:
C
11
H
5
NO
3
DAR
-
D-Arginine
Formula:
C
6
H
15
N
4
O
2
SAR
-
Sarcosine
Formula:
C
3
H
7
NO
2
OXJ
-
1-[3,5-Bis(trifluoromethyl)phenyl]-N-Methylmethanamine
Formula:
C
10
H
9
F
6
N
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
DI7 1(C)
15
15
1
1
Complete
Chiral checks - OK
DAR 2(C)
12
12
1
1
Complete
Chiral checks - OK
PHE 3(C)
12
12
1
1
Complete
Chiral checks - OK
SAR 4(C)
6
-
-
-
Residue too small to validate
OXJ 5(C)
17
17
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
DI7 1(C)
O: OXT
1
DAR 2(C)
O: OXT
1
PHE 3(C)
-
0
SAR 4(C)
-
0
OXJ 5(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand DI7-DAR-PHE-SAR-OXJ
List of
interactions
DI7 1(C) to OXJ 5(C)
