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PDBsum entry 6o4z
Go to PDB code:
Ligand/metal interactions
PDB id
6o4z
Ligand highlighted
LYS-LEU-VAL-VAL-
VAL-ALA-VAL-GLY-
VAL
Ligands
LYS-LEU-VAL-VAL-
VAL-ALA-VAL-GLY-
VAL
LYS 1(C) to VAL 9(C)
GOL
×3
GOL 301(A)
GOL 101(B)
GOL 101(C)
SO4
SO4 102(B)
Metals
_NA
×6
NA 307(A)
NA 302(A)
NA 303(A)
NA 304(A)
NA 305(A)
NA 306(A)
Ligand
LYS-LEU-VAL-VAL-VAL-ALA-VAL-GLY-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 1(C)
10
10
1
1
Complete
Chiral checks - OK
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 3(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 4(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 5(C)
8
8
1
1
Complete
Chiral checks - OK
ALA 6(C)
6
-
-
-
Residue too small to validate
VAL 7(C)
8
8
1
1
Complete
Chiral checks - OK
GLY 8(C)
5
-
-
-
Residue too small to validate
VAL 9(C)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LYS 1(C)
-
0
LEU 2(C)
O: OXT
1
VAL 3(C)
O: OXT
1
VAL 4(C)
O: OXT
1
VAL 5(C)
-
0
ALA 6(C)
-
0
VAL 7(C)
-
0
GLY 8(C)
-
0
VAL 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand LYS-LEU-VAL-VAL-VAL-ALA-VAL-GLY-VAL
List of
interactions
LYS 1(C) to VAL 9(C)
_NA
×6
