Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 6iqh
Go to PDB code:
Ligand/metal interactions
PDB id
6iqh
2 instances of ligand highlighted
NAG-NAG-BMA-MAN-
NAG-MAN-NAG-FUC
Ligands
NAG-NAG-BMA-MAN-
NAG-MAN-NAG-FUC
×2
NAG 1(E) to FUC 8(E)
GUA
×2
GUA 509(A)
Ligand
NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(E)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(E)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(E)
12
12
1
0
Complete
Chiral checks - OK
NAG 5(E)
15
15
1
0
Complete
Chiral checks - OK
MAN 6(E)
12
12
1
0
Complete
Chiral checks - OK
NAG 7(E)
15
15
1
0
Complete
Chiral checks - OK
FUC 8(E)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC
List of
interactions
NAG 1(E) to FUC 8(E)
(also representing equivalent ligand NAG 1(F) to FUC 8(F) )
