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PDBsum entry 6b5e
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Top Page protein ligands metals Protein-protein interface(s) links
Ligand/metal interactions PDB id
6b5e
10 instances of ligand highlighted
DAU
Ligands
DAU ×10
DAU 301(A)
DAU 302(E)
DAU 302(F)
TYD ×6
TYD 303(A)
EDO
EDO 305(A)
Metals
_NA ×2
NA 305(B)
NA 304(C)
_MG ×9
MG 303(E)
MG 303(F)
MG 302(B)
MG 303(B)
MG 302(C)
MG 302(D)
MG 302(G)
MG 302(H)
_CL
CL 304(A)
  
Ligand DAU - 2'Deoxy-Thymidine-5'-Diphospho-Alpha-D-Glucose
Formula: C16H26N2O16P2
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
DAU 301(A) 36 36 0 0 0 0 0 1 0 0
Advanced Analysis
Residue Name Mismatches Count
DAU 301(A) O4P: O3P|O3P: O4P 2
Additional Information
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Ligand corresponds to this enzyme's product dTDP-alpha-D- glucose


LIGPLOT of interactions involving ligand DAU

JSmol




List of
interactions
 

DAU 301(A)

also representing 7 other equivalent ligands:
DAU 301(B)
DAU 301(C)
DAU 301(D)
DAU 301(E)
DAU 301(F)
DAU 301(G)
DAU 301(H)
  
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