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PDBsum entry 6b1v
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Ligand/metal interactions PDB id
6b1v
5 instances of ligand highlighted
G4S-DGS-G4S-DGS
Ligands
G4S-DGS-G4S-DGS ×5
G4S 1(D) to DGS 4(D)
G4S 1(E) to DGS 4(E)
EDO
EDO 510(A)
Metals
_CA ×3
CA 505(B)
CA 501(C)
  
Ligand G4S-DGS-G4S-DGS

G4S - 4-O-Sulfo-Beta-D-Galactopyranose [4-O-Sulfo-Beta-D-Galactose; 4-O-Sulfo-D-Galactose; 4-O- Sulfo-Galactose] Formula: C6H12O9S
DGS - 3,6-Anhydro-2-O-Sulfo-Alpha-D-Galactopyranose [3,6-Anhydro-D-Galactose-2-Sulfate; 3,6-Anhydro-2-O- Sulfo-Alpha-D-Galactose; 3,6-Anhydro-2-O-Sulfo-D- Galactose; 3,6-Anhydro-2-O-Sulfo-Galactose] Formula: C6H10O8S
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
G4S 1(D) 16 16 0 0 Complete Chiral checks - OK
DGS 2(D) 15 15 1 0 Complete Chiral checks - OK
G4S 3(D) 16 16 1 0 Complete Chiral checks - OK
DGS 4(D) 15 15 1 0 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
G4S 1(D) O9: O8|O7: O9 2
DGS 2(D) - 0
G4S 3(D) O9: O8|O7: O9 2
DGS 4(D) O9: O7|O7: O8 2
Additional Information
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LIGPLOT of interactions involving ligand G4S-DGS-G4S-DGS

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List of
interactions
 

G4S 1(D) to DGS 4(D)

also representing 3 other equivalent ligands:
G4S 1(F) to DGS 4(F)
G4S 1(G) to DGS 4(G)
G4S 1(H) to DGS 4(H)
  
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