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PDBsum entry 5vue
Go to PDB code:
Ligand/metal interactions
PDB id
5vue
Ligand highlighted
LEU-THR-VAL-GLN-
VAL-ALA-ARG-VAL-
TRP
Ligands
LEU-THR-VAL-GLN-
VAL-ALA-ARG-VAL-
TRP
LEU 1(C) to TRP 9(C)
Ligand
LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TRP
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
Complete
Chiral checks - OK
THR 2(C)
8
8
1
1
Complete
Chiral checks - OK
VAL 3(C)
8
8
1
1
Complete
Chiral checks - OK
GLN 4(C)
10
10
1
1
Complete
Chiral checks - OK
VAL 5(C)
8
8
1
1
Complete
Chiral checks - OK
ALA 6(C)
6
-
-
-
Residue too small to validate
ARG 7(C)
12
12
1
1
Complete
Chiral checks - OK
VAL 8(C)
8
8
1
1
Complete
Chiral checks - OK
TRP 9(C)
15
15
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
THR 2(C)
-
0
VAL 3(C)
-
0
GLN 4(C)
-
0
VAL 5(C)
-
0
ALA 6(C)
-
0
ARG 7(C)
O: OXT
1
VAL 8(C)
-
0
TRP 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-THR-VAL-GLN-VAL-ALA-ARG-VAL-TRP
List of
interactions
LEU 1(C) to TRP 9(C)
