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PDBsum entry 5nqk
Go to PDB code:
Ligand/metal interactions
PDB id
5nqk
Ligand highlighted
GLU-LEU-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
Ligands
GLU-LEU-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
GLU 1(P) to VAL 10(P)
Metals
_NA
NA 301(B)
Ligand
GLU-LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLU 1(P)
10
10
1
1
Complete
Chiral checks - OK
LEU 2(P)
9
9
1
1
Complete
Chiral checks - OK
ALA 3(P)
6
-
-
-
Residue too small to validate
GLY 4(P)
5
-
-
-
Residue too small to validate
ILE 5(P)
9
9
1
1
Complete
Chiral checks - OK
GLY 6(P)
5
-
-
-
Residue too small to validate
ILE 7(P)
9
9
1
1
Complete
Chiral checks - OK
LEU 8(P)
9
9
1
1
Complete
Chiral checks - OK
THR 9(P)
8
8
1
1
Complete
Chiral checks - OK
VAL 10(P)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLU 1(P)
-
0
LEU 2(P)
O: OXT
1
ALA 3(P)
-
0
GLY 4(P)
-
0
ILE 5(P)
O: OXT
1
GLY 6(P)
-
0
ILE 7(P)
-
0
LEU 8(P)
O: OXT
1
THR 9(P)
-
0
VAL 10(P)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GLU-LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
List of
interactions
GLU 1(P) to VAL 10(P)
_NA
