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PDBsum entry 5nne
Go to PDB code:
Ligand/metal interactions
PDB id
5nne
Ligand highlighted
GLY-LYS-ALA-ALY-
GLY-LYS-ALY-THR-
GLN-MET
Ligands
GLY-LYS-ALA-ALY-
GLY-LYS-ALY-THR-
GLN-MET
GLY 1198(C) to MET 1207(C)
EDO
EDO 201(A)
Ligand
GLY-LYS-ALA-ALY-GLY-LYS-ALY-THR-GLN-MET
-
N(6)-Acetyllysine
Formula:
C
8
HNN
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLY 1198(C)
5
-
-
-
-
-
-
-
-
-
LYS 1199(C)
10
10
1
1
0
0
0
0
0
0
ALA 1200(C)
6
-
-
-
-
-
-
-
-
-
ALY 1201(C)
13
13
1
1
0
0
0
0
0
0
GLY 1202(C)
5
-
-
-
-
-
-
-
-
-
LYS 1203(C)
10
10
1
1
0
0
0
0
0
0
ALY 1204(C)
13
13
1
1
0
0
0
0
0
0
THR 1205(C)
8
8
1
1
0
0
0
0
0
0
GLN 1206(C)
10
10
1
1
0
0
0
0
0
0
MET 1207(C)
9
5
0
0
4
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
GLY 1198(C)
-
0
LYS 1199(C)
-
0
ALA 1200(C)
-
0
ALY 1201(C)
-
0
GLY 1202(C)
-
0
LYS 1203(C)
-
0
ALY 1204(C)
O: OXT
1
THR 1205(C)
-
0
GLN 1206(C)
O: OXT
1
MET 1207(C)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GLY-LYS-ALA-ALY-GLY-LYS-ALY-THR-GLN-MET
List of
interactions
GLY 1198(C) to MET 1207(C)
