PDBsum entry 5e4j

Ligand/metal interactions

PDB id

5e4j


	Ligand highlighted
	NAG-NAG-BMA-MAN- MAN

Ligands

NAG-NAG-BMA-MAN-
MAN

NAG 1(B) to MAN 5(B)

NAG ×2

DME

SO4 ×10

Ligand NAG-NAG-BMA-MAN-MAN

NAG - 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine] Formula: C₈H₁₅NO₆

BMA - Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose] Formula: C₆H₁₂O₆

MAN - Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose] Formula: C₆H₁₂O₆

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
NAG 1(B)	15	15	1	1	Complete		Chiral checks - OK
NAG 2(B)	15	15	1	0	Complete		Chiral checks - OK
BMA 3(B)	12	12	1	0	Complete		Chiral checks - OK
MAN 4(B)	12	12	1	0	Complete		Chiral checks - OK
MAN 5(B)	12	12	1	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

Use mouse to move/zoom
3D Viewers:

Het Group NAG matches this enzyme's reactant acetylcholine with similarity 41.18%

LIGPLOT of interactions involving ligand NAG-NAG-BMA-MAN-MAN

List of
interactions

NAG 1(B) to MAN 5(B)